macaque brain atlas

Works well with AutoTract. INIA19 primate brain atlas A detailed atlas informed from over 100 structural MR scans of 19 rhesus macaque animals. Ventral Surface View. Lab member, Minhui Ouyang, won magna cum laude award at … Image data are mapped to a stereotaxic MRI atlas of the macaque brain or the mouse brain. Skull and brain, as illustrated in Gervais ' Histoire naturelle des mammifères The macaque average atlas is comprised of 25 T1-weighted MRIs of normal young adult macaque brains (18 Macaca fascicularis, 7 Macaca mulatta). The template comprises both whole-head and brain-only unbiased template images, tissue probability maps, a deformation map, as well as cortical surfaces with 3D printed examples, and brain parcellation (label) … Tools and Methods section expanded to include Nomenclature for the rat brain from the Swanson-2004 atlas. For the generation of the initial brain mask (for the purpose of skull stripping), we employed the UNC-Wisconsin juvenile macaque atlas via ABC (Prastawa et al., 2005). Martin R.F., Bowden D.M. It was first presented as a poster and demo session at the INCF booth of SFN 2009 in Chicago. UNC Atlases for Macaque Brain Image Analysis. Here we present a brain template for the Japanese macaque (Macaca fuscata). All these initial, automatically generated brain masks were manually corrected by human expert raters via InsightSNAP (Yushkevich et al… The high resolution macaque brain DTI atlas (0.4x0.4x0.4mm), completed by Dr Lei Feng et al, has been released to public in the website (www.brainmrimap.org) hosted by the lab, August, 2017. CTb (area 7 injection) (Cholera Toxin, subunit b) coronal, immuno, whole-brain 267 slides, 0.46 um/pixel Dataset Id: 124 A comprehensive transcriptomic and open chromatin atlas of the rhesus macaque brain is key to a deeper understanding of the brain. Bowden (Editor), R.F. Robertson (Author), D.M. The Allen Human Brain Atlas is a unique multimodal atlas of the human brain, integrating anatomic and genomic information. Medial Surface View. - Tissue_multiAtlas: Multi-atlas for tissue segmentation in macaques, includes left-right mirrored images for symmetric analysis (6-12 months old). The atlas viewer requries Java 5 or above. Baltimore: University Park Press, 1970. Martin (Editor) & … The 121 NeuroMaps macaque atlas covers the whole brain and is presented on an ex vivojuvenile 122 rhesus macaque brain (Bakker, Tiesinga & Kötter, 2015; Rohlfing et al., 2012). It illustrates mapping an area to the macaque atlas but is equally applicable to the mouse atlas. Such voxel-based quantitative techniques require a species-specific standardized brain template. A stereotaxic template atlas of the macaque brain for digital imaging and quantitative neuroanatomy. View the Template Atlas macaque brain (Macaca fascicularis) Select a View: Coronal Sections. Single-subject macaque brain DTI template was obtained by transforming the postmortem high-resolution DTI data into in vivo space. A template atlas based on coronal, sagittal and horizontal brain sections, Brain Structure and Function, 10.1007/s00429-011-0370-5, 217, 2, (613-666), (2011). This atlas is not based on a single subject but instead is an average constructed from the averaged position, orientation and scale from all the individual subjects and is representative of both the intensities and spatial positioning of anatomical structures. Lateral Surface View. With the DTI resolution about 300µm and T 2-weighted image resolution about 200µm, many gray and white matter structures can be identified. Unpaired t tests were used to assess differences in network activity between animal groups. With the addition of this atlas collection, there are now three Macaca species that have population- average MRI-based atlases: N2K atlas for Macaca nemestrina (Black et al., 2001a, 2004), F6 atlas for Macaca fascicularis (Vincent et al., 2007), and the SL atlas collection, reported here, for Macaca mulatta. Here we characterize the transcriptome of 416 brain samples from 52 regions of 8 rhesus macaque brains. This tutorial shows how mapping to a standard atlas adds value to image data. Please note that the atlas is not exactly coregistered to macaque MNI space. Digitally labelled atlas images were aligned to the template in 2D and then in 3D. Statistical Analysis. The atlas is publicly accessible and allows users to search for gene expression … Completed definitions, photomicrographs and mapping to the Macaque Brain Atlas of cortical areas by Brodmann-1909 (30 areas), Mauss-1908 (31), Vogts-1919 (29), Walker-1940 (13), Bonin-1947 (35). Dubach (Author), J.E. Primate Brain Maps: Structure of the Macaque Brain: A Laboratory Guide with Original Brain Sections, Printed Atlas and Electronic Templates for Data and Schematics (including CD-ROM). Here we present a brain atlas collection for the adult rhesus macaque (M. mulatta) and review methods for creating multi-modal atlases using an infrastructure that will allow voxel- and surface-based approaches that are common in human brain mapping studies to be readily applied to non-human primate studies. 1st Edition by J. Wu (Author), M.F. José L. Lanciego, Alfonso Vázquez, The basal ganglia and thalamus of the long-tailed macaque in stereotaxic coordinates. Ex vivo DTI of ten macaque brains was then averaged in the in vivo single-subject template space to generate population-averaged macaque brain DTI atlas. Tokyo: University of Tokyo Press, 1970. In Japanese. The Barbary macaque (Macaca sylvanus), also known as Barbary ape or magot, is a macaque species native to the Atlas Mountains of Algeria and Morocco along with a small population of uncertain origin in Gibraltar. Stereotaxic Atlas of the Brain of Macaca fuscata. We identify gene modules associated with specific brain regions like the cerebral cortex, pituitary, and thalamus. Macaque brain atlases generated at UNC-Chapel Hill. Population-averaged macaque brain atlas with high-resolution ex vivo DTI integrated into in vivo space. The NIH Blueprint Non-Human Primate (NHP) Atlas consists of a suite of gene expression data, neuroanatomical data and informatics tools for exploring the cellular and molecular architecture of the developing rhesus macaque brain. By averaging the voxel intensities of the 7 rhesus MRI which … It is one of the best-known Old World monkey species. Abstract To aid in the analysis of rhesus macaque brain images, we aligned digitized anatomical regions from the widely used atlas of Paxinos et al. The rhesus atlas was created via the macaque atlas (see Macaquefor details). It uses exploratory work of Gleb Bezgin, creator of the CoCoMac-Paxinos3D tool. It may take 30 seconds to load the Atlas the first time. to a published magnetic resonance imaging (MRI) template based on a large number of subjects. The goal of this study is to provide a digital 3D atlas which is expected to be a valuable resource for many macaque-based brain research. imaging to establish a stereotaxic brain atlas of the macaque brain. A publication in Neuroinformatics followed in 2015. We present a large-population MRI atlas of the cynomolgus macaque brain, derived from 162 high-resolution, T1-weighted structural scans of cynomolgus monkeys ranging from 2 to 9 years old. Visit Website. However, a script to warp between the INIA19 and MNI space is supplied with the Lead-DBS macaque … A number of modern digital anatomy techniques, based on structural MR brain images, have recently become applicable to the non-human primate brain. The rhesus macaque average atlas is comprised of 7 T1-weighted MRIs of normal young adult rhesus macaque brains. The Scalable Brain Atlas is developed by Rembrandt Bakker in collaboration with many others. The resulting maps of t statistics were examined to localize relevant regions anatomically in reference to a macaque brain atlas. Dorsal Surface View. Construction of spatiotemporal infant cortical surface atlas of rhesus macaque Abstract: As a widely used animal model in MR imaging studies, rhesus macaque helps to better understand both normal and abnormal neural development in the human brain. NIH Blueprint Non-Human Primate (NHP) Atlas. Available atlases: - DTIAtlas_6_12months: DTI atlas with white matter fiber tracts (6-12 months old). to brain atlases for presentation and publication. Kusama T., Mabuchi M. Stereotaxic Atlas of the Brain of Macaca fuscata. The NeuroMaps 123 segmentation was later refined on the INIA19 adult population in vivo symmetric template 124 (Rohlfing et al., 2012). The white matter tracts were traced with DTI-based tractography. The NIH Blueprint NHP atlas is an online database of gene expression in the rhesus macaque brain from 6 prenatal stages and four postnatal stages including birth to four years old. Atlas macaque brain image Analysis population-averaged macaque brain or the mouse atlas in macaques, includes left-right mirrored images symmetric... Uses exploratory work of Gleb Bezgin, creator of the Human brain, integrating anatomic and genomic.... 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